Ensembl C.elegans

 

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About the C. elegans genome

Assembly and Annotation

C. elegansThe data on this site is a direct import of the Wormbase 150 dataset. Although no additional genebuild was carried out, a series of blast runs was done to provide ESTs, Uniprot and Unigene hits, and other similarity data. Cross references to identifiers in other databases were also generated. New in this release are cross references to GO.

We have included C.elegans into the Ensembl system to allow people to access the data through the Ensembl user interface (both for visualisation and data mining) and to provide cross-species integration throught our comparative genomics resources (such as homologous gene links and protein family/domain pages).

The canonical data for C. elegans is managed at Wormbase.

What's New in Ensembl 40

Caenorhabditis elegans News

There is no Caenorhabditis elegans-specific news this release.

General News

  • New orthologue display - GeneTreeView
    A new Ensembl view page, GeneTreeView, displays gene orthologies as tree diagrams (example).
    Read more...
  • Core data patches

    The following non-schema changes have been made to the core database.
    Read more...

  • API changes
    The API has been updated to reflect changes to the schema, including setting xref versions to 0 if undefined, and supporting ditag tables.
    Read more...
  • Compara updates

    Protein/Protein

    Updates of orthologues/paralogues and families to include the new species and gene sets announced.
    Read more...

  • Schema changes

    A number of patches and additions have been made to the Ensembl schema this release.
    Read more...

More news...

Statistics

Assembly: WS 150, Nov 2005
Genebuild: Wormbase, Nov 2005
Database version: 40.150a
Known genes: 20,065
Pseudogenes: 944
rRNA genes: 8
Mt_tRNA genes: 22
Genefinder gene predictions: 20,614
Gene exons: 138,229
Gene transcripts: 27,006
Base Pairs: 100,585,160
Golden Path Length: 100,277,175
Most common InterPro domains: Top 40 Top 500

 

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Ensembl release 40 - Aug 2006
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